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The Trooper tracks down Wraith's space station where she's rigged the Senator with explosives and the Trooper had to choose whether the track down and kill Wraith or save the Senator. Before heading out, the General revealed Wraith had kidnapped a Senator and provided the Trooper with a ship to track her and the rest of Havoc Squad down. The Trooper defeated the veteran, and discovered a communications relay which Havoc Squad used to communicate and it was discovered the traitors were located on four different planets. Garza discovered that former leader and founder of Havoc Squad, Jek Karden, was serving as a member of a mercenary group and working to help the traitors and the Imperials. The Trooper was called in to meet with members of the Senate about Havoc's defection, before returning to duty.
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The Trooper stopped the Migrant Merchant's Guild, and with the help of a Sergeant named Ava Jaxo the they stopped the Black Suns. She ordered them to stop the gangs, the Back Suns and the Migrant Merchant's Guild, from supplying the treacherous Havoc Squad.
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Reaching Coruscant, the Troopr and Jorgan met with General Garza.
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They took a shutter and headed to Coruscant. When the Trooper returned to headquarters, they found Jorgan being demoted by a general as a scapegoat for Havoc Squad's defection, and the Trooper got promoted to lieutenant as the leader of the new Havoc Squad and Jorgan was made the first member of the new team. The Trooper found Havoc Squad colluding with Imperial officers, defecting to the Empire and stealing the bomb before fleeing the planet. When they did not report in, The Trooper went to retrieve the bomb and save them. The Trooper followed the intel on finding the bomb, and Havoc Squad went a head to the separatist to retrieve it. On their way to headquarters, they met Havoc Squad member, Gearbox and several other Republic Troopers where he/she is briefed about the ZR-57 Orbital Strike Bomb .The walker was then hit by an anti-vehicle missile launched from inside the nearby Drelliad Village, and the Trooper was assigned to find caches of shoulder-fire missile launchers and destroy them. The Trooper then completed the task and went to Fort Garnik where they met the other Havoc Squad members Commander Harron Tavus, Wraith, Needles, and Fuse, along with a Republic operations officer named Lieutenant Aric Jorgan.
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The Trooper landed on Ord Mantell as a new sergeant just transferred to Havoc Squad, a special forces unit.
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